Contribute to PlantSeg

PlantSeg is an open-source project, and we welcome contributions from the community. There are many ways to contribute, such as writing tutorials or blog posts, improving the documentation, submitting bug reports and feature requests, or writing code that can be incorporated into PlantSeg itself.

Getting Started

To set up the development environment, run:

mamba env create -f environment-dev.yaml
conda activate plant-seg-dev

To install PlantSeg in development mode, run:

pip install -e . --no-deps

Hierarchical Design of PlantSeg

Please refer to Python API.

Coding Style

PlantSeg uses Ruff for linting and formatting. Ruff is compatible with Black for formatting.

Before Submitting a Pull Request

Run Tests with pytest

Ensure that pytest is installed in your conda environment. To run the tests, simply use:

pytest

Check Syntax with pre-commit

The PlantSeg repository uses pre-commit hooks to ensure the code is correctly formatted and free of linting issues. While not mandatory, it is encouraged to check your code before committing by running:

pre-commit run --all-files

Commit messages are important. Please follow the Conventional Commits specification.

For efficiency, pytest is not included in the pre-commit hooks. Please run the tests separately.