Batch processing¶
Plantseg supports processing a whole stack of images at once through the use of batch scripts.
To generate such a workflow script, first process one image in the intended way,
and export the result. Then, go to the Batch tab in Napari and save the workflow
script to a yaml file.
You can review and edit workflow scripts using the build-in workflow editor;
open it either directly from the napari Batch tab, or from the command
line using plantseg -e .
Widget: Export Batch Workflow¶
- Export directory: Select the directory where the workflow will be exported
- Workflow name: Name of the exported workflow file.