Evaluation Module

This documentation page is a copy of the GoNuclear-Evaluation README.md file.

This module contains the code for evaluating the performance of the trained models. This is an implementation of the scoring metirc in 2018 Data Science Bowl.

Cite

If you find this work useful, please cite our paper:

@article{vijayan2024deep,
  title={A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context},
  author={Vijayan, Athul and Mody, Tejasvinee Atul and Yu, Qin and Wolny, Adrian and Cerrone, Lorenzo and Strauss, Soeren and Tsiantis, Miltos and Smith, Richard S and Hamprecht, Fred A and Kreshuk, Anna and others},
  journal={Development},
  volume={151},
  number={14},
  year={2024},
  publisher={The Company of Biologists}
}